I will recommend waiting 2-3 days between treatments. Keep in mind that PP can damage the gills of the koi.
I also have/had a bacterial problem in my pond and have resorted to PP. I have done 8 treatments of PP.
The first 5 was done 2 days apart and the other 3 treatments was done 7 days apart but i waited 2 weeks between the first 5 treatments and the other 3. So far it looks like i am winning the battle.
After the PP treatment you can do a 10%-20% water change for everyday for 2 days ...thats what i do.
I have also unpacked all my filters and media including the oyster shells and then i PP'd it all sepeartely with strong dose. In other words i am going to have a virgin pond.
I have also cut back the feeding to twice a week as my filter is ofcourse not up and running yet. The best way to boost the filter that i know of is with Bao Bio Clear.
I also feed pellets with olive oil , garlic and lots of honey to try and boost the imune system o the koi.
My koi that have been affected are in qt with .06% salt and methelyne blue anti-bacterial. Almost all of them have recovered. I must add that i PP dipped each one individually before going into the qt and dipped them 3 times afterwards - weekly. 1g PP for 10l of water. For 5 minutes. I really think this played a big role as the koi in the qt recovered while some in the main pond was still being affected by the bacteria while i was doing the PP treatments on the pond.
Wayne